| Topic | Category | Description | URL |
|---|
Topic | Category | Description | URL |
|---|---|---|---|
| Data anonymization | tool | R package sdcMicro for anonymizing tabular data | https://cran.r-project.org/web/packages/sdcMicro/sdcMicro.pdf |
| Data anonymization | guides | Data anonymization competence center | https://swissanon.ch/ |
| Data anonymization | tool | Tool for anonymization of text data | https://www.qualiservice.org/de/helpdesk/webinar/tools.html |
| Data anonymization | tool | Tool for anonymization of imaging data (python) | https://pypi.org/project/dicom-anonymiser/0.1.1/ |
| DMP | examples | DMP examples from UK's Digital Curation center | https://www.dcc.ac.uk/resources/data-management-plans/guidance-examples |
| DMP | tool | DMP generator by SwissInstitute of Bioinformatics. It has predefined boxes that will generate a doc with predefined paragraphs. Requires Switch Edu-ID login. Oriented for life sciences | https://dmp.vital-it.ch/#/login |
| DMP | form | SNSF form for DMPs | https://www.snf.ch/media/en/4i9AE5YEIf7tqhGz/DMP_content_mySNF-form_en.pdf |
| DMP | checklist | DMP checklist by the Data Life-Cycle Management (DLCM) project | https://www.dlcm.ch/download_file/force/66/371 |
| DMP | form | DMP Data Life-Cycle Management (DLCM) project form based on SNSF | https://www.dlcm.ch/download_file/force/77/371 |
| DMP | template | EPFL DMP template | https://go.epfl.ch/dmp-epfl |
| DMP | template | Dutch NWO DMP templates | https://www.nwo.nl/en/research-data-management#downloads-download |
| DMP | examples | DMP examples from Università della Svizzera italiana | https://www.usi.ch/sites/default/files/storage/attachments/servizio-ricerca-dmp_examples.pdf |
| DMP | examples | DMP examples from the University of Bern | https://www.ub.unibe.ch/service/open_science/forschungsdatenmanagement/fdm_vt/datenmanagementplan/index_ger.html#pane1085877 |
| DMP | tool | An online tool recommended by the European Commission for creating Data Management Plans. It includes templates for various research funding agencies. | https://dmponline.dcc.ac.uk/ |
| DMP | tool | Requires prior installation and allows planning and executing data management for a research project. | https://rdmorganiser.github.io/en/ |
| DMP | tool | A platform providing templates and guidance for creating Data Management Plans, primarily for the U.S. research community. | https://dmptool.org/ |
| DMP | catalogue | LIBER: Data Management Plan Catalogue offering access to real Data Management Plans from various research projects. | https://libereurope.eu/dmpcatalogue/ |
| DMP | tool | Digital Curation Centre: DMPonline An online tool by the Digital Curation Centre for creating Data Management Plans with guidance and templates. | https://dmponline.dcc.ac.uk/ |
| Software | guides | Guidelines for sustainable research software management, ensuring documentation, testability, readability, modularity, scalability, usefulness, and standardization. | https://www.software.ac.uk/resources/guides/software-management-plans |
| Software | guides | Netherlands eScience Center Guide providing best practices for research software quality and sustainability. | https://www.esciencecenter.nl/research/software-quality-guidelines/ |
| Software | guides | CLARIAH Software Quality Guidelines focusing on the quality aspects of research software within the CLARIAH project. | https://www.clariah.nl/en/about/software-quality-guidelines |
| Software | guides | German Aerospace Centre's Software Engineering Guidelines | https://www.dlr.de/content/en/articles/news/2020/04/20201110_software-engineering-guidelines.html |
| Software | tool | The Dataverse Project is an open source web application to share, preserve, cite, explore, and analyze research data. | https://dataverse.org/ |
| ELN | tool | Tool to help you find electronic lab notebooks (ELN) | https://eln-finder.ulb.tu-darmstadt.de/home |
| ELN | guides | The Turing Way - Electronic Lab Notebooks | https://book.the-turing-way.org/reproducible-research/rdm/rdm-elns#rr-rdm-choosing-elns |
| ELN | guides | Spreadsheet with comparison of ELNs | https://docs.google.com/spreadsheets/d/1ar8fgwagOh30E31EAPL-Gorwn_g6XNf81g3VDQnQ_I8/edit?gid=0#gid=0 |
| FAIR | catalogue | Many recipes for concrete RDM actions including FAIR-related but more | https://faircookbook.elixir-europe.org/content/search-wizard.html |
| FAIR | guides | Resources on FAIR data compiled by the Open Science Services of the University of Zurich (University Library). Includes tutorial and checklist. | https://www.ub.uzh.ch/en/wissenschaftlich-arbeiten/mit-daten-arbeiten/FAIR-und-Open-Data.html |
| FAIR | tool | FAIR checker is a webapp to help you improve your metadata and inspect metadata of published data. Just add the URL of a dataset. It will give a 'FAIRness' score and describe how much each FAIR principle is fulfilled. | https://fair-checker.france-bioinformatique.fr |
| File formats | guides | UK Data service recommendations for file formats | https://ukdataservice.ac.uk/learning-hub/research-data-management/format-your-data/recommended-formats/ |
| File formats | guides | Searchable table with an inventory of solutions for conversions between data and file formats | https://conversion-hub.sshopencloud.eu/ |
| File formats | guides | ETH Zurich extensive table with recommended file formats for archiving | https://unlimited.ethz.ch/spaces/DD/pages/194127879/File+formats+for+archiving |
| File formats | guides | EPFL minimal table with recommended file formats for archiving | https://www.epfl.ch/campus/library/services-researchers/infoscience-en/help-infoscience/advice-on-filing-your-files-naming-formats-versions/ |
| File formats | catalogue | Large tables with recommended formats from CLARIN centers (language data) | https://standards.clarin.eu/sis/views/recommended-formats-with-search.xq |
| Legal | tool | Data Protection/Ethics Self-Assessment Tool (DESAT) Tool,now AVA for self asessment on legal aspects | https://www.dsi.uzh.ch/en/research/projects/archive/strategic/desat/tool.html |
| Legal | guides | Swiss Federal act on intellectual property,copyright and data protection | https://www.fedlex.admin.ch/en/cc/internal-law/23 |
| Legal | guides | Swiss Human research legislation | https://www.bag.admin.ch/bag/en/home/gesetze-und-bewilligungen/gesetzgebung/gesetzgebung-mensch-gesundheit/gesetzgebung-forschung-am-menschen.html |
| Legal | template | Templates on legal agreements for data transfer from the Swiss Personalized Health Network (SPHN) | https://sphn.ch/services/dtua/ |
| ORD | infrastructure | The European Open Science Cloud (EOSC) Federation Handbook provides an overview of the organisational and operational structure,and technical characteristics,of the EOSC Federation | https://eosc.eu/eosc-federation-handbook/ |
| Metadata | catalogue | Metadata standard catalogues | https://rdamsc.bath.ac.uk/ |
| Metadata | standards | Brain Imaging Data Structure (BIDS) | https://bids.neuroimaging.io/ |
| Metadata | standards | Open Microscopy | https://www.openmicroscopy.org/ |
| Metadata | standards | REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology | https://doi.org/10.1038/s41592-021-01166-8 |
| Metadata | standards | MINSEQE: Minimum Information about a high-throughput Nucleotide SeQuencing Experiment - a proposal for standards in functional genomic data reporting | https://www.fged.org/projects/minseqe |
| Metadata | standards | Generic metadata standard (what you will use if there is no standard. E.g.,Metadata for a Zenodo entry) | https://schema.datacite.org/ |
| Metadata | guides | The Center for Expanded Data Annotation and Retrieval (CEDAR) creates a computational ecosystem for development,evaluation,use,and refinement of biomedical metadata. | https://metadatacenter.org/ |
| Metadata | catalogue | Links to information about these disciplinary metadata standards,including profiles,tools to implement the standards,and use cases of data repositories currently implementing them. | https://www.dcc.ac.uk/guidance/standards/metadata |
| Open Science | guides | The Turing Way: collaborative handbook on open science | https://book.the-turing-way.org/ |
| ORD | guides | Organisation for Economic Co-operation and Development (OECD) | https://legalinstruments.oecd.org/en/instruments/OECD-LEGAL-0347 |
| ORD | guides | Science Europa RDM | https://www.scienceeurope.org/our-priorities/open-science/research-data-management |
| ORD | guides | RDMkit with a large table of tools and resources | https://rdmkit.elixir-europe.org/data_life_cycle |
| ORD | guides | Open Science Training Handbook | https://open-science-training-handbook.github.io/Open-Science-Training-Handbook_EN/02OpenScienceBasics/02OpenResearchDataAndMaterials.html |
| ORD | guides | SNSF policy on ORD | https://www.snf.ch/en/dMILj9t4LNk8NwyR/topic/open-research-data |
| ORD | guides | UK Concordat on Open Research Data | https://www.ukri.org/wp-content/uploads/2020/10/UKRI-020920-ConcordatonOpenResearchData.pdf |
| ORD | policies | Openaire requirements. OpenAIRE is a key implementer of the European Open Science Cloud (EOSC). | https://www.openaire.eu/how-to-comply-with-horizon-europe-mandate-for-rdm |
| ORD | infrastructure | ELIXIR is a European life sciences infrastructure | https://elixir-europe.org/ |
| SOPs | guides | Animal-related SOPs verified through the animal welfare officers of the University of Zurich,the animal wellfare commission of the canton of Zurich and the cantonal veterinary office. | https://www.ltk.uzh.ch/en/Protocols.html |
| SOPs | guides | University of Michigan SOPs,step-by-step,detailed descriptions of how specific animal care and use procedures are performed. | https://az.research.umich.edu/animalcare/sops |
| SOPs | guides | Jon Hopkins University SOPs and guidelines | https://researchanimalresources.jhu.edu/sops-guidelines/ |
| TrustedResearchEnvironment | network | EU network of trusted research environments | https://eosc-entrust.eu/ |
| Vocabularies | guides | Publications office of the EU: controlled Vocabularies | https://op.europa.eu/en/web/eu-vocabularies/controlled-vocabularies |
| Ontologies | catalogue | The Ontology Lookup Service (OLS): a repository for biomedical ontologies to provide a single point of access to the latest ontology versions. | https://www.ebi.ac.uk/ols4/ |
| Ontologies | catalogue | Gene Ontology resource | https://geneontology.org/ |
| Ontologies | catalogue | Open Biological and Biomedical Ontology Foundry | https://obofoundry.org/ |
| Ontologies | catalogue | A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing,visualization,query,integration,and analysis. | https://ontobee.org/ |
| Ontologies | catalogue | UBERON is an integrated cross species anatomy ontology | https://www.ebi.ac.uk/ols4/ontologies/uberon |
| Ontologies | catalogue | The Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet. | https://www.ncbi.nlm.nih.gov/taxonomy |
| Ontologies | catalogue | Cell ontology | https://obophenotype.github.io/cell-ontology/ |
| Ontologies | catalogue | The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. | https://geneontology.org/ |
| Ontologies | catalogue | Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. | https://www.ebi.ac.uk/chebi/ |
| Metadata | catalogue | FairSharing: A curated,informative and educational resource on data and metadata standards,inter-related to databases and data policies. | https://fairsharing.org/ |
| Preregistration | tool | Aspredicted is a platform to facilitate preregistration of studies, its focus is on starting with a very simple and short preregistration template to help getting started | https://aspredicted.org/ |
| Reporting | catalogue | Catalogue of domain-specific reporting guidelines | https://www.equator-network.org/ |
| Repositories | catalogue | re3data registry of research data repositories | https://www.re3data.org/ |
| Repositories | catalogue | selection from SNSF of ORD respositories | https://www.snf.ch/en/WtezJ6qxuTRnSYgF/topic/open-research-data-which-data-repositories-can-be-used |
| Repositories | tool | Wizard to help you find the repository suitable for your data | https://www.ebi.ac.uk/submission/ |
| Repositories | catalogue | Nucleic Acid Research databases | https://www.oxfordjournals.org/nar/database/c/ |
| Repositories | catalogue | An Online Catalog of Human Genes and Genetic Disorders OMIM | https://www.omim.org/ |
| Reproducibility | guides | MOOC course on several aspects of RDM for reproducibility | https://www.fun-mooc.fr/en/courses/reproducible-research-ii-practices-and-tools-for-managing-comput/ |
| RDM | catalogue | extensive list of resources for RDM in general | https://forschungsdaten.info/ |
| Reproducibility | guides | Platform for preregistration in psychology with templates | https://prereg-psych.org/ |
| Teaching | guides | Research Software Design by Example | https://gvwilson.github.io/rsdx/ |
| Teaching | guides | Open resources for teaching reproducibility | https://psyteachr.github.io/ |
| Teaching | tool | webexercises enables instructors to easily create interactive web pages that students can use in self-guided learning. | https://github.com/PsyTeachR/webex |
| Teaching | catalogue | OERSI - Open Educational Resources Search Index | https://oersi.org/resources/ |
| Teaching | catalogue | The Carpentries empowers a diverse global community by equipping individuals with essential data and computational skills | https://carpentries.org/ |
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